Glyma05g35151 - SoyBase

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Report for Sequence Feature Glyma05g35151

Feature Type:	gene_model
Chromosome:	Gm05
Start:	39259515
stop:	39261423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g35151

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25440	AT	Annotation by Michelle Graham. TAIR10: B-box type zinc finger protein with CCT domain \| chr1:8933939-8935284 REVERSE LENGTH=417	SoyBase	E_val: 6.00E-84	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_D0EP06	UniRef	Annotation by Michelle Graham. Best UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP06_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D0EP06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP06_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g35151

Locus	Gene Symbol	Protein Name
	COL6a	Constans-like 6a

Expression Patterns of Glyma05g35151

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g35151 not represented in the dataset	Glyma05g35151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g35151

Paralog	Evidence	Comments
Glyma08g04570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g35151 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g233700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g35151

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g35151

Limit To All Plant Sequences

>Glyma05g35151.1   sequence type=CDS   gene model=Glyma05g35151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCCTGCGACAGCTGCGTAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCTTCCTCAAAAGTAACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAAGACGAAGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGATAACGATGAGACGGAGGAGCAGATGCTGTGTCGGGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGTTTTTCTGACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAGCCTACTTGATAAAGAAGACGATGAAATAAGTGCGTGTGTGGGAGGGGGAGAGGGAGTTCAAGGTGCAATGGTGAAGGTTAAGGATGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAATCGGTTTTTGATGATGCCTTTCATTGGAATAACATTGAGTCTGTGCTGTCAGATGCACGGGAAGAGAAGGAGGGTGTGGTGGCGTGTGATGGAGGTGTCGGTGATGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGGTGGGGAAGTAAGAAGCTTAAGGGGGCACCTAGATGGTGGAAGAGAAGCAAGAGTGTCAAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA

Predicted protein sequences of Glyma05g35151

Limit To All Plant Sequences

>Glyma05g35151.1   sequence type=predicted peptide   gene model=Glyma05g35151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTHAWHSGFTRKARTPRHNSKHFALQQRLKDEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFAEFAADVESLLDKEDDEISACVGGGEGVQGAMVKVKDEEEIDGDVACYLESVFDDAFHWNNIESVLSDAREEKEGVVACDGGVGDEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVGGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH*

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